Bioinformatics Archives - Page 3 of 3

November 20, 2018

Developing nf-core DeepVariant, a Google variant caller: A tutorial for noobs using Nextflow

This blog post is essentially a list of things I wish I knew before I started making an nf-core pipeline, which would have made things easier.

Bioinformatics/Open Source

October 22, 2018

nf-core: a community-driven initiative to standardise Nextflow-based pipelines

The main goal of nf-core is to establish best practices concerning pipelines that are built with Nextflow.

Bioinformatics/Open Source

July 5, 2018

Bringing together high-quality open-source community resources with CloudOS

Over the last few years open-source has been increasingly becoming the norm, even in Bioinformatics. The number of high-quality applications which are freely available on GitHub and other Git providers is increasing, such as the pipelines that the Broad institute uses for production.

Bioinformatics/Open Source/Product

June 19, 2018

DeepVariant as a Nextflow Pipeline on CloudOS

In December 2017, the team at Google Brain joined the effort by releasing an open source, deep learning based variant caller: DeepVariant. DeepVariant outperforms its competitors by accuracy – it even won the accuracy award at the precision FDA Truth Challenge.

Bioinformatics/Open Source/Product

June 14, 2018

Improving genomic analyses over cloud using Grakn

Let’s focus on where Grakn makes a difference for us: what is the best resource to run specific analyses over cloud? We needed a technology that would allow us to both efficiently store our data and easily use it to train an ML model.

Bioinformatics/Cloud computing

Lifebit Blog

Category: Bioinformatics

Developing nf-core DeepVariant, a Google variant caller: A tutorial for noobs using Nextflow

nf-core: a community-driven initiative to standardise Nextflow-based pipelines

Bringing together high-quality open-source community resources with CloudOS